Thursday, October 17, 2024

Caribbean Ancient DNA...

Although hardly the most sophisticated or reliable method, using Gedmatch's autosomal DNA comparison feature can be entertaining and occasionally useful. In this case, comparing our data to that of around 42 kits of ancient samples was an interesting experience. Indeed, of the 42 ancient samples, we only had matches with 4 individuals, which is significant. All 4 of them, however, were either individuals from Cuba or the Bahamas, surprisingly. We apparently did not share DNA, at least not detectable using Gedmatch, with ancient persons from Puerto Rico and Hispaniola with kits on Gedmatch (that we know of). The dates given for the samples are from undated in one case but the others the woman from Preacher's Cave, in the Bahamas, was the subject of an important article published in 2018 by Hannes Schroeder. According to this study, "Results are consistent with Puerto Ricans and the ancient Taino forming a clade without any significant gene-flow postdivergence." Clearly, the ancient Lucayan woman's genome was similar to that of modern-day Puerto Ricans. Indeed, this study found that Puerto Ricans share large parts of their genome with the ancient "Taino" of the Caribbean. Another study found similarities between the Preacher's Cave sample and precontact Puerto Rico samples in terms of autosomal DNA. These similarities also extend to South American Amazonian groups, such as the Yukpa, Piapoco, Karitiana, and Surui. Furthermore, modern Puerto Ricans harbor mtDNA that is at least partly a reflection of precontact Puerto Rico populations. 

What we find interesting in our matches is the lack of a Puerto Rico or Hispaniola connection. While this is probably, in part, due to the less sophisticated tools and models via Gedmatch, we did match with another ancient "Taino" sample from the Bahamas. On Gedmatch, it is called Kit WE2232796 (*Bahamas Taino Native), with further indication that its test results are from 23andMe. Is this one of their indigenous Caribbean samples the company uses? This person appears to be the same as the Atunwa Inaru, the name given to this ancient woman from the Bahamas. Anyway, we only shared a total of 3 segments, the longest at 3.6 cM. Our total Half-Match segments was 9.7 cM and a total of 458412 SNPs were used, with 47.467 percent fully identical. As one might expect, shared DNA with someone who lived several centuries ago would be low. Yet, with another kit from the same woman from Preacher's Cave, Atunwa Inaru on Gedmatch, we shared a total Half-Match segments of 14 cM, with the largest segment at 6.7 cM of 3 shared segments. 260057 SNPs were used for the comparison with 38.498 percent identical. We assume this match is at least somewhat reliable since geneticists using more sophisticated matches noted similarities in the ancestry of the Preacher's Cave sample and that of modern and ancient Puerto Ricans. We are not sure which of the two kits for the same person are more accurate or reliable, though we'd bet money on the first kit. 

The other two matches, however, remain more problematic. Both are from Cuba, although the date and exact location are unclear. One, called Brizuela on Gedmatch, is supposedly from the 12th century. With that sample, we share one segment at 4.5 cM, but at a lower SNP density. The other sample from Cuba shared even less with us, only 3.8 cM. But, with this Cuban sample, more SNPs and at a higher density. One wonders if these Cuban samples may reflect a 'ceramic' culture whose ancestors included some of the same groups who migrated into the Bahamas from Hispaniola. Or, alternatively, due to the widespread seafaring abilities of the indigenous Caribbean and the lack of evidence for inbreeding in the sample from Preacher's Cave, perhaps some groups found spouses or significant others from distant islands in the archipelago. What we do not understand, however, is our inability to find ancient samples from Hispaniola with whom we share DNA...

Wednesday, October 16, 2024

Igbo and African Ancestry

Roseline Siguret's tabulation of African slave "nations" in the Quaarter of Jacmel (from "Esclaves d'indigoteries et de caféières au quartier de Jacmel (1757-1791)"

After reading FonteFelipe's recent blog on African ancestry and matches of his sample of 30 Haitians, we decided to reexamine our own African matches on Ancestry. Unfortunately, we could only find 2 obvious African matches, both Igbo-descended individuals. With one of them we share 23 cM of DNA. Our Haitian parent, who, unsurprisingly, has more African ancestry, shared 29 cM with the same Igbo individual. In addition, they also had African matches who, based on their surnames and publicly posted genealogies, hailed from Mali, Congo, Nigeria, and what appears to be Sierra Leone. The known ethnic breakdown is Igbo, Yoruba, and Mandinka. We could not easily determine the ethnic background of the other Africans. Needless to say, our Haitian parent's African matches were usually of a low degree of shared cM of DNA, 8-16. Her ethnicity estimates assigned 1% Yorubaland, 2% Nigeria-North Central and 2% Nigerian Woodlands (in addition to Mali, Senegal, Ivory Coast & Ghana, Benin & Togo, Cameroon, Western Bantu Peoples). She received a whopping 27% Benin & Togo and 21% Nigeria in the latest update. While there are many problems with her results in the update (her European ancestry is assigned mostly to Spain, even though her previous results assigned the largest European percentage to France), looking at her African matches does suggest some generally useful information on Haitian ancestry. The preponderance of Nigerian matches is likely a reflection of the greater number of Nigerian customers of Ancestry as well as the deep ancestry of Haitians in Nigeria, Benin & Togo and neighboring areas that supplied many of the African captives enslaved in Saint-Domingue. Here is a table breakdown illustrating her matches:


After her match with one Igbo person at 29 cM shared DNA, the next closest match was at 16 cM with someone bearing a Yoruba name. As suggested by FonteFelipe and the work of scholars such as Geggus, there clearly was a larger presence of Igbo and people from the Bight of Biafra in Saint-Domingue's south (which included Jacmel, in the calculations of Geggus). This noticeable Igbo presence is attested to by plantation inventories, testaments, and other contracts mentioning the enslaved population in 18th century Bainet. After Creoles, Igbos were one of the most common groups. The Yoruba ancestry and related Benin/Togo is possibly, in part, represented by the large Creole population among the slaves in Bainet during the second half of the 18th century. Many of the Creoles were likely the children of people who were purchased from the Slave Coast, which would have included various groups represented in Saint-Domingue (like the "Aradas"). This also could have accounted for the "Senegalese" results in our parent's ethnicity estimates. After all, if Senegal was important early on in the French slave trade, then some of the Creoles may have harbored ancestry from Senegambia. As for Mali connection, we assume this to be a sign of ancestry from "Mandingues" and, perhaps, Bambara, in Saint-Domingue. The Bambara would have reached Saint-Domingue through slave trading networks in Senegal, as was likely the case for "Mandingues" who may have not always been clearly distinguished from the Bambara. Interestingly, the Bamana were present among the enslaved in Bainet and one of them played a prominent role during the Haitian Revolution in the Sud (Gilles Bambara). 

Sadly, without more data from African customers or better ethnicity estimate information on African reference panel groups (such as directly telling us which ones we share DNA with), we are still left with only a general picture. Nonetheless, the Igbo contribution to our African ancestry seems very likely based on our shared DNA with one Igbo family. Furthermore, it seems our African ancestry probably includes Mandinka or Malinke (and Bambara?) ancestry as well as Yoruba. To some extent there was undoubtedly a Congolese or Central African contribution, though "Congos" in Bainet could have included Mondongues, Loango, Kongo, and others. As for "Senegal" and areas like Nigeria-North Central, we assume that could be Hausa and Wolof or Fulbe ancestry. Perhaps the "Senegal" and Mali ancestry is slightly inflated by Poulard or Fula, while Nigeria-North Central is from the Hausa or another another northern Nigerian population whose name was not recognized or used in Saint-Domingue. There definitely was a small flow of captives from northern Nigeria, but usually of Hausa or Nupe origin in Saint-Domingue's nomenclature for African "nations." We can only hope that subsequent updates see improvements in the area of Nigeria and West Africa as a whole. 

Tuesday, October 15, 2024

Ancient Kingdoms of Peru

Although it is a little outdated (published in the 1990s), Nigel Davies's The Ancient Kingdoms of Peru provides a nice overview on the history of ancient Peru. Covering the period from the preceramic and Chavin cultures to the Spanish conquest, Davies attempts to elucidate the development of civilizations in Peru (and neighboring areas, to a certain extent) as well as the shifting analysis of these past cultures by archaeologists and historians. Obviously, the lack of a system of writing and records prior to the Spanish period means that most of the book draws from studies by archaeologists who have examined various sites, developed ceramic typologies and chronologies, and have endeavored to understand the nature of political, social, and economic organization. As the author gets closer to the era of the Spanish conquest, written sources from the colonial period become useful, particularly for the Incas and, to a lesser extent, the Chimu state of the coast. Davies masterfully draws upon this vast written corpus when appropriate, although occasionally delving into problematic "language" of "savages" when discussing Indians in Ecuador who opposed Inca expansion. But this probably reflects the time in which the book was published. As a brief introduction to a very complex center of early human civilization, Davies wrote a useful work. He probably did not need to include his critiques of wacky theories of ancient aliens visiting the Nasca, but perhaps a book aimed for a non-specialist audience had to do so to dispel pseudoscientific ideas. It could have potentially been strengthened by a more detailed breakdown of the verticality theory for Andean civilizations, as well as an overview of how long-distance trade with Ecuador and the Amazon may have impacted pre-Inca civilizations. Nonetheless, for those new to the Moche's marvelous arts and the long-lasting iconographical symbolism across much of the region's civilizations, there was clearly much interaction, migration, exchange, and cultural borrowing from the coast to the highlands. Now, we have to find copies of Miguel de Cabello Balboa, Cieza de Leon, and other early Spanish sources on Peru for a deeper dive into the precolonial past. 

Monday, October 14, 2024

Angels


Although not his best work, this lovely duet of Ayler and Call Cobbs performing "Angels" is a true delight. As someone deeply imbued in gospel, blues, and and "roots" of African American music, Ayler's spiritually-charged "Angels" is nothing but delight for nine minutes. The recording from the Hilversum Session is also excellent, featuring an entire band.

Sunday, October 13, 2024

Juan de Espinosa


Whilst perusing Vilma Benzo de Ferrer's Pasajeros a la Espanola, 1492-1530, we saw that the father of Pedro de Espinosa was a resident in today's Dominican Republic before moving to Puerto Rico with the conquest of that island. Established in the Santiago de Los Caballeros area in 1510, Juan de Espinosa later moved to Puerto Rico, where he was one of the early recipients of an encomienda. According to Vilma Benzo de Ferrer, de Espinosa also received 7 naborias de casa in Santiago (although we thought he was already residing in Puerto Rico by 1514?). 

Saturday, October 12, 2024

Mali and the "Western Sudan"


Another interesting thing about the Ancestry Update is seeing the 4 reference populations used for their "Mali" region. This area is based on the Bambara, Dogon, Fula and Mende, although they also state that populations with similar genetic background can be found in Burkina Faso, Cote D'Ivoire, Gambia, Guinea, Guinea-Bissau, Liberia, Niger, Senegal (as well as Mali and Sierra Leone). Our Haitian parent, the origin of our "Mali" ancestry, has also matched with people from this region as distant cousins (1 from Mali, another from Sierra Leone of a Mandinka background). Since "Mandingues" and "Bambaras" were present in Saint-Domingue, it seems very likely that some of our ancestors came from this region of West Africa. Indeed, Ancestry assigned us 6% in the 2024 update, and the "hacked" results put it at 6.89% for "Mali." Perhaps some of our distant forebears were from Segu or Kaarta, but were captured and sold to the French slave traders on the coast of Senegal?

Ancestry's "Senegal" category also overlaps with this, which we inherited from both sides for a total of 4% (3.80% according to the "hacked" results). Alas, the specific ethnic groups used as reference for this category are not listed, although we know Poulards, "Senegalois" and Wolofs were in Saint-Domingue. We suspect the "Senegal" inherited from our Spanish Caribbean ancestry might reflect some of the ethnic groups known to be in the West Indies in the 1500s and 1600s, such as the Wolof, Berbersi, and others. Unfortunately, without knowing the ethnic breakdown of the reference populations for "Senegal" and other West African regions, like Ivory Coast and Ghana, it is difficult to say.

Friday, October 11, 2024

African Ancestry Update


Although these popular genealogy/ancestry DNA tests should always be used cautiously, we do find Ancestry's 2024 update to be worthy of attention. They seem to be trying harder at distinguishing the various subregions of African countries. Thus, Nigeria, an enormous place occupied by a plethora of ethnic groups, finally has a number of new regions. It looks like other parts of sub-Saharan Africa may have to wait for a subsequent update to see this level of detail, but it's a step in the right direction. However, comparing our results and those of our Haitian parent to their previous results, we notice that the 2024 update seems to minimize Cameroon, Congo, and Western Bantu Peoples percentages. Since in both of our cases, our sub-Saharan African ancestry was always overwhelmingly West African, the latest update was not too different from past results. However, we wonder if the creation of new Nigeria regions may have absorbed some of the Cameroon that was previously lumped into the older category of Cameroon, Congo and Western Bantu Peoples. 

Unfortunately, in our case we did not see any African sub-regional breakdowns besides Central Nigeria and North-Central Nigeria, each one at an estimated 5%. Central Nigeria is "centered" upon the Niger-Benue Confluence region, stretching north and south to what seems to us as an unknown extent. This presumably overlaps with North-Central Nigeria, also assigned at 5%, which is centered on the area of Hausaland in northern Nigeria and southern Niger (but including the following ethnic groups: Afizere, Anaguta, Atyap, Berom, Ham and Hausa). Of course, there are other ethnic groups in Northern Nigeria, but North-Central seems to emphasize the Hausa in the north. Central Nigeria, on the other hand, remains a vague label, but based on the following groups as reference: Agatu (Idoma North), Ake, Alago (Idoma Nokwu), Arum, Bu, Eggon (Mo Egon), Gwandara, Mada, Mama, Mijili (aJijili), Ninzo, and Rindre . If the North-Central Nigeria percentage is accurate, however, perhaps we do have "Hausa" ancestry. After all, a small but noticeable number of Hausa were enslaved in Saint-Domingue. But far more Igbo were imported, and a Nupe presence was also present. Historian David Geggus found at least 227 Hausa in Saint-Domingue, plus another 60 "Gambari" based on his study of sex ratios of the enslaved population from 1721-1797.